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SEREX clone BRC-Co-27 #1

SEREX clone BRC-Co-27 #1

Catalog number RDB04487
Resource name SEREX clone BRC-Co-27 #1
Clone info. SEREX clone BRC-Co-27, clone 1 from Colon Cancer AGH-CO-2. Reactivity: +. Corresponding gene: Chromosome X Open Reading Frame 15 (Cxorf15). Nucleoide position 43nt to 4413nt of NM_018360.2 (cds 57-1643nt) is cloned. Known difference (at least): G to A substitution at 1382nt (synonym).
Comment Similar clone: 5': NGO-Br-30 5' (ID 840) 99% similarity, Hom-TsMe2-14-R (ID 1123) 98% similarity; 3': NGO-Br-30 3' (ID 841) 99% similarity, Hom-TsMe2-14-U (ID 1122) 98% similarity. UniGene cluster: 5': Hs. 201624, Limited tissues; 3':Hs. 406078, Ubiquitous.
Vector backbone pBK-CMV (Plasmid)
Size of vector backbone 4.5 kb
Selectable markers Kan^r
Gene/insert name Human Chromosome X Open Reading Frame 15 (Cxorf15) (NM_018360, 2045 bp) cDNA
Depositor|Developer Obata, Yuichi |
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External Database
Human Chromosome X Open Reading Frame 15 (Cxorf15) (NM_018360, 2045 bp)

          Reference sequence
            

          Distribution information

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          RDB04487 SEREX clone BRC-Co-27 #1 DNA solution

          Please review the QC test results indicated by check icon below as well as clone information before placing your order.

          References and tips

          Electronic file

          Original reference

          Further references such as user reports and related articles (go to bottom)

          Featured content


          Sequence information

          RIKEN BRC has sequenced portions of this material for quality test.
          Please review the QC test results indicated by check icon as well as clone information before placing your order.

          Test sheet RDB15326_A7Hfp1_2.pdf check

          Nucleotide sequence of a portion of this resource (if available).

          Primer: RDB04487#2
          Sequence file: RDB15326_A7Hfa_2.seq check
          >04487_15326_A7Hf_RDB04487#2_A02_01_ABI08.ab1
              1 ACCCAAGGCC TAATGTTTTC CTGTCGGAGT TTGGCGTTGT GGATGTCATG CTGCTCCAGC
             61 TGGGCTTGAA TTTCATTTAA GGTAATCTGG AAATGTGCAG TTGCTTCTTT ACGTCGTTCT
            121 TCTTCCTCTC GTGCCTGCTG CATATTTTCC TCCTTTAACG TCTTATTGTG ACGCTGAAGT
            181 TCTCTGCAAA GAGATTCTAG CTTGCTTCTT GCCAAGATAG CCTTGCTATG TTCACTCTGC
            241 AAGTGAACTT TCTCTTTCAC AATCTGGGCT TGCTTCTTCT GCAGGATCTT CATTTGCTTC
            301 TGAACACTCC TGCTCTCCTC CAGAAGATCA GCATATTTCT TACAGAGAGC TGCCAGCTTC
            361 TCCTCTGGGG TTGAAAGGGT GTTTAGGGCT TGCATCAGTA ATAAAACTTC TTTTCCTAAA
            421 GTTTTTTCTT TGTTCCTGTT GCACTCTGAA TCTTGCTGAC CATCAGGGGG ATCTGTTCGA
            481 GCTTCTCCCC CAGGGATTTC CTCTCTTGAT TCTTGCGTGC AGTATGCTGG GCTCACCAAA
            541 TTCCTGTTCT CTGTTATAAA GTCACTGCCT TCATCCTCTT CCAATGAATG CTTGTTACTT
            601 GTGCCACCAC AATTTGAGCC TTGATGTTGA AGAATATCAT TTGATTGAGA GTTACACAAC
            661 ATATCTGCTT TCACCCCTAG CCCACAAATT CCAGCTTCTT CCATTGTGCC AATTTCAAAC
            721 TTCTGCCGCG GGCTGCGTCG CCGTCCGCCC CGTCCGGCCT CAGTCGCCTC TTCGGCGCCG
            781 CCGCCTCTTC CCCGCGCTGC CTCCTCTACC CGCGTCGCCA TGAGGTGACG GCAGCCTCGT
            841 GCCGAATTCT TTGGATCCAC TAGTGTCGAC CTGCAGGCGC GCGAGCTCCA GCTTTTGTTC
            901 CCTTTAGTGA GGGTTAATTT CGAGCTTGGC GTAATCAAAG GTCATAGCTG TTTCCTGTGT
            961 GAAATTGTTA TCCGCTCACA ATTCCACACA ATATACGAGC CGGAAGTATA AAGTGTAAAG
           1021 CCCTGGGGGT GCCTAATGAG TGAGCTAACT CACAGTAAAT TGCGGGCTAG CGGATCTGAC
           1081 GATTCACTAA ACCAGCTCTG GCTATATAGA CTTCCCACCG TACACGTCCT ACCGGCCCAA
          1141 TTTTGGCGGT TCC
          //
          Primer: RDB04487#1
          Sequence file: RDB15326_A7Hfb_2.seq check
          >04487_15326_A7Hf_RDB04487#1_E01_05_ABI08.ab1
              1 CGGAAAATGG GTAGGAAAAA GTAAGGAAAA TTTTCACCAC AAAACCAATA GTTAACTACT
             61 AACAGAGAAA GTTATACACA AAATATATCT CTCAATACAG TGATCACACC TCATCTTAGT
            121 CAACCGACTC GATGGCCGGA GCAGAGCCTG TGGACGGGGG CTTTTGCACA GCGCTTCTCT
            181 GACTCTTGGG CTCAGCCTCC AGGTGCGCTC CCAGGGCTCT TTTCGAGGAA GTGTTCAGCT
            241 CCTTGTGAGA ATCCAGGGCA GTACAGGGCT GCATCACAGG TGTTGCTAAA TCCCTGTTCG
            301 CCGCTTTGAT GGCCGCTTTG ATGGATACCT GCTCTTTCAG GACTTCCACC TTCTCATTGA
            361 GCTCATTCCT TTCTGTTTGA AGAGCCCTGC ACAGCTTCTC TAACCGTTCC AGTTTTATTT
            421 GAAGGGCCTT GTACTCTTTA TCACGGACTG TTTTCTCTTC AGCCATTTGC AGAAGTGCTT
            481 TATTATTGTT TTCCCATTTG GTACGCCAAA TTATTGTTTC TTTTTCCAGT TTTTTAATTT
            541 TCTTTGTCAT CTTTTCCATT TCCTGTCTGA AGGTTGTAAA CAGTTCATTG CTTTTTGCCA
            601 TGGTAGTCTG GAATTCTTCA AACTTATCCA TATAAAGAGA AAGCTGCTGT TTTAGTTGTA
            661 CTTCTTGCTG TTTCATTTGT TCGTATTTGT GCCTCGATTC TGTCGCTTCT TTTAATAAAA
            721 ACTCTCTCTC TCTCTGATGT TTTTCATCAG CTTCTTTTAT CAGTTGTGTC GTTTGCTGCA
            781 GTTTGGCATC CACGAGCTGC TGTTGCAGTT CCTTATGTTT GAACACCTTA TCAATGTGCT
            841 CTTCCCTCAG TGCGTACTGT TCGATGAGCT TCTTTAGCTT CTCCCCCAGC TCAATGTTTT
            901 CCTGTCGGAG TTTGGCGTTG TGGATGTCAT GCTGCTCCAG CTGGGGCTTG AATTTCATTT
            961 AAGGTAATCT GGAAATGTGC AGTTGCTTCT TTACGTCGTT CTTCTTTCCT CTCGTGCCCT
           1021 GCTGCATATT TTCCTCCCTT TAACGTCTTA TTGTGACGCT GAAGTTCTCT GCAAAGAGAT
           1081 TCTAGCTTGC TTTCTTGCCA AGATAGCCCT TTGCTTATGT TCACTCTGCA GTGAACTTCT
          1141 CTTTCACAAT CTTGGGGCCC TTTGCTTTTC TTTCTCGTGC A
          //
          Primer: SV40polyA-R
          Sequence file: RDB15326_A7Hfc_2.seq check
          >04487_15326_A7Hf_2_SV40polyA_R_B07_04_ABI24.ab1
              1 AAGAAATTGG AGTTTTAAGC AGTAAACCTC TACAAATGTG GTATGGCTGA TTATGATCAT
             61 GAACAGACTG TGAGGACTGA GGGGCCTGAA ATGAGCCTTG GGACTGTGAA TCTAAAATAC
            121 ACAAACAATT AGAATCAGTA GTTTAACACA TTATACACTT AAAAATTGGA TCTCCATTCG
            181 CCATTCAGGC TGCGCAACTG TTGGGAAGGG CGATCGGTGC GGGCCTCTTC GCTATTACGC
            241 CAGCTGGCGA AAGGGGGATG TGCTGCAAGG CGATTAAGTT GGGTAACGCC AGGGTTTTCC
            301 CAGTCACGAC GTTGTAAAAC GACGGCCAGT GAATTGTAAT ACGACTCACT ATAGGGCGAA
            361 TTGGGTACAC TTACCTGGTA CCCCACCCGG GTGGAAAATC GATGGGCCCG CGGCCGCTCT
            421 AGAAGTACTC TCGAGTTTTT TTTTTTTTTT TTTTAAGTTT ATCATACATA TTTACTTAAT
            481 CTATACAGAA TCAAGTAGAT AAAATCAGAT TCACATTAGT GAAAAATCTC TACAAAATGT
            541 CTTTGAAAAG CAAAACGAGA CTGCCTCTTA ACAATTCGTA TCCTCATGAA AGACGTGGGC
            601 TGTAAAAATA AAGCAGTGTG TTTAGCACAA ACTAGAAGAT ATCTGCATCA TTTTTTTCAC
            661 AGTTATTTCC ATCTACAGTC TGAAAGAGGT AGATTTTTCT GCAACACCTG AGAATTGAAT
            721 TGTGATAACC AGGTGTAATA AAGGCAGTTG CATACATAAC TGAAAAATAC TGGTCTCAAG
            781 ACCAAGAAAT GTACTCCTAA CAAGTCTGAG GATGAAATGG TCCATATTAC CCAAGACCCA
            841 AGTTTTCTCT ACACCTTGGA GTCCACCGCC AATATAAATA ATACACATCA CGATTCCATG
            901 ATGGTGCAAC AATTGCAATT TAAGTGAATT CAACATTTAA ACCTTTTCTG GGCCCAGCCT
            961 AGTAGCATTA CAGTGTTCTA AGAAATATGG TAGATATGGG GGTGCGCTAC AAAGCCACAC
           1021 ACTGGGCTGT GAGTGATCAC TGTAGGAAGA TGTCTCTCAG GGGTCCATTG TTTTTATTCA
           1081 CTGTATTGGA GAGGATCTGG AAGACACAAT GCATTCAGAC AGAATTCAAT ATCGTTCCCA
          1141 ACCACTATAA AATATAAG
          //
          Primer: SV40pro_F_V2
          Sequence file: RDB15326_A7Hfd_2.seq check
          >04487_15326_A7Hf_2_SV40pro_F_V2_C07_07_ABI24.ab1
              1 TGTCCGAGCG TTTTTGGAGC TAGGCTTTTG CAAGATCGAT CAAGAGACAG GATGAGGATC
             61 GTTTCGCATG ATTGAACAAG ATGGATTGCA CGCAGGTTCT CCGGCCGCTT GGGTGGAGAG
            121 GCTATTCGGC TATGACTGGG CACAACAGAC AATCGGCTGC TCTGATGCCG CCGTGTTCCG
            181 GCTGTCAGCG CAGGGGCGCC CGGTTCTTTT TGTCAAGACC GACCTGTCCG GTGCCCTGAA
            241 TGAACTGCAA GACGAGGCAG CGCGGCTATC GTGGCTGGCC ACGACGGGCG TTCCTTGCGC
            301 AGCTGTGCTC GACGTTGTCA CTGAAGCGGG AAGGGACTGG CTGCTATTGG GCGAAGTGCC
            361 GGGGCAGGAT CTCCTGTCAT CTCACCTTGC TCCTGCCGAG AAAGTATCCA TCATGGCTGA
            421 TGCAATGCGG CGGCTGCATA CGCTTGATCC GGCTACCTGC CCATTCGACC ACCAAGCGAA
            481 ACATCGCATC GAGCGAGCAC GTACTCGGAT GGAAGCCGGT CTTGTCGATC AGGATGATCT
            541 GGACGAAGAG CATCAGGGGC TCGCGCCAGC CGAACTGTTC GCCAGGCTCA AGGCGAGCAT
            601 GCCCGACGGC GAGGATCTCG TCGTGACCCA TGGCGATGCC TGCTTGCCGA ATATCATGGT
            661 GGAAAATGGC CGCTTTTCTG GATTCATCGA CTGTGGCCGG CTGGGTGTGG CGGACCGCTA
            721 TCAGGACATA GCGTTGGCTA CCCGTGATAT TGCTGAAGAG CTTGGCGGCG AATGGGCTGA
            781 CCGCTTCCTC GTGCTTTACG GTATCGCCGC TCCCGATTCG CAGCGCATCG CCTTCTATCG
            841 CCTTCTTGAC GAGTTTCTTC TGAGCGGGAC TCTGGGGTTC GAAATGACCG ACCAAGCGAC
            901 GCCCAACCTG CCATCACGAG ATTTCGATTC CACCGCCGCC CTTCTATGAA AGTTGGCTTC
            961 GGAATCGTTT TTCCGGGACG CCCGGCTGGG ATGATCCTTC CAGCGCGGGG GATTCTTCAT
           1021 GCTTGGAGTT CTTTCGCCCA ACCCTTAGGG GGGGAGGCTT AACTGAACAA CGAGAGACCA
           1081 ATTACCCGGG AAGGAAACCG CGCTATGACG CCAATTAAAA GACGGATTAA ACGCACGTGT
          1141 TTGGGTCGTT TGGTTCATAT AACGCCGGGG TTCGTTCTCC TCAAGG
          //

          Please visit Sequencing and PCR primers for primer information.


          References

          Original, user report and related articles


          2022.05.18

          GNP_filter3_RDBDEP_html_220516.pl