Resource data sheet
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pMY

Complete genome of JC virus, archetype

Catalog number RDB03032
Resource name pMY
Clone info. Complete genome of JC virus, archetype.
Vector backbone pUC19 (Plasmid)
Size of vector backbone 2,690 bp
Selectable markers Amp^r
Gene/insert name Hum_Polyoma JCV genome Genomic DNA
Depositor Yogo, Yoshiaki |

Distribution information

Please check terms and conditions set forth by the depositor, which are specified in the RIKEN BRC Catalog and/or Web Catalog.
Terms and conditions set forth by the DEPOSITOR In publishing the research results obtained by use of the BIOLOGICAL RESOURCE, a citation of literature(s) designated by the DEPOSITOR is requested.
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RDB03032 pMY DNA solution

Ordering Information [in Japanese] [in English]

References and tips

Electronic file

Electronic file Map RDB03032.gif from Depositor

Original reference

original Yogo, Y., Isolation of a possible archetypal JC virus DNA sequence from nonimmunocompromised individuals. J. Virol., 64, 3139-3143 (1990). PMID 2159570.

Further references such as user reports and related articles (go to bottom)

Featured content


Sequence information

RIKEN BRC has sequenced portions of this material for quality test. Primers and the results are shown below.

Data are summerized on test sheet below.

Test sheet RDB17355_A9F3p1-1.pdf

Nucleotide sequence of a portion of this resource (if available).

Primer: pUC-CAPbs_up_F RDB17355_A9F3a.seq
>03032_17355_A9F3_2_pUC-CAPbs_up_F_C04_07_ABI24.ab1
    1 GGAACGGGGG CAGTGAGCGC AACGCATTAA TGTGAGTTAG CTCACTCATT AGGCACCCCA
   61 GGCTTTACAC TTTATGCTTC CGGCTCGTAT GTTGTGTGGA ATTGTGAGCG GATAACAATT
  121 TCACACAGGA AACAGCTATG ACCATGATTA CGCCAAGCTT GCATGCCTGC AGGTCGACTC
  181 TAGAGGATCC TGTGTTTTCA TCATCACTGG CAAACATTTC TTCATGGCAA AACAGGTCTT
  241 CATCCCACTT CTCATTAAAT GTATTCCACC AGGATTCCCA TTCATCTGTT CCATAGGTTG
  301 GCACCTAAAA ACAAAAAATT AAGTTTATTG TAAAAAACAA AATGCCCTGC AAAAGAAAAA
  361 TTGTGGTTTA CCTTAAAGCT TTAGATCCCT GTAGGGGGTG TCTCCAAGAA CCTTCTCCCA
  421 GCAATGAAGA GCTTCTTGGG TTAAGTCACA CCCAAACCAT TGTCTGAAGC AATCAAAGCA
  481 ATAGCAATCT ATCCACACAA GTGGGCTGCT TCTTAAAAAT TTTCTGTTTC TATGCCTTAA
  541 TTTTAGCATG CACATTAAAC AGGGGCAATG CACTGAAGGA TTAGTGGCAC AATTAGGCCA
  601 TTCCTTGCAA TAAAGGGTAT CAGAATTAGG AGGAAAATCA CAACCAACCT CTGAACTATT
  661 CCATGTACCA AAATCAGGCT GATGAGCAAC TTTTACACCT TGTTCCATTT TTTTATATAA
  721 AAAATTCATT CTCTTCATTT TGTCTTCGTC CCCACCTTTA TCAGGGTGAA GTTCTTTGCA
  781 TTTTTTCAGA TAAGCTTTTC TCATGACAGG AATGTTTCCC CATGCAGATC TATCAAGGCC
  841 TAATAAATCC ATGAGCTCCA TGGATTCCTC CCTATTCAGC ACTTTTGTCC ATTTTTTGCT
  901 TTTTGTAGCA AAAAATTAGT GCAAAAAAGG GAAAAACAAA GGGAATTTCC CTGGCCTCCT
  961 AAAAAAGCCT CCACGCCCTT ACTACTTCTG AGTAAGCTTG GGAGGCGGAG GCGGCCTCGG
 1021 CCTCCCTGTA TATATAAAAA AAGGGAACGG TAGGGAGGGA GCTGGCTAAA CTGGGATGGG
 1081 CTGGCCAGCC AAGCATGAGC TCATTACTAG GGAGCCAAAC CAAGCAGAAC AAGGCCCAGA
1141 AGGGGGAAGA G
//
Primer: pUC-M13_-100 RDB17355_A9F3b.seq
>03032_17355_A9F3_2_pUC-M13_-100_D04_10_ABI24.ab1
    1 TGCAGGCGAT TAGTTGGGTA CGCCAGGGTT TTCCCAGTCA CGACGTTGTA AAACGACGGC
   61 CAGTGAATTC GAGCTCGGTA CCCGGGGATC CCAACACTCT ACCCCACCTA AGAAGAAAAA
  121 AAAGGTAGAA GACCCTAAAG ACTTTCCTGT AGATCTGCAT GCATTCCTCA GTCAAGCTGT
  181 GTTTAGTAAT AGAACTGTTG CTTCTTTTGC TGTGTATACC ACTAAAGAAA AAGCTCAAAT
  241 TTTATATAAG AAACTTATGG AAAAATATTC TGTAACCTTT ATAAGTAGAC ATGGTTTTGG
  301 GGGTCATAAT ATCTTGTTTT TTCTAACACC ACATAGACAT AGAGTTTCAG CAATTAATAA
  361 TTACTGTCAA AAACTATGTA CCTTTAGTTT TTTAATTTGT AAAGGTGTGA ATAAGGAATA
  421 CTTGTTTTAC AGTGCCTTGT GTAGACAGCC ATATGCAGTA GTGGAAGAAA GTATTCAGGG
  481 GGGCCTTAAG GAGCATGACT TTAACCCAGA AGAACCAGAA GAAACTAAGC AGGTTTCATG
  541 GAAATTAGTT ACACAGTATG CTTTGGACAC CAAGTGTGAG GATGTTTTCT TGCTTATGGG
  601 CATGTACTTA GACTTTCAGG AAAACCCTTT GCAATGCAAA AAATGTGAAA AAAAGGATCA
  661 GCCAAATCAC TTTAACCATC ATGAAAAGCA CTATTATAAT GCCCAAATTT TTGCAGACAG
  721 CAAAAATCAA AAAAGCATTT GCCAGCAGGC TGTTGATACT GTAGCAGCCA AACAAAGGGT
  781 TGACAGTATC CATATGACCA GAGAAGAAAT GTTAGTTGAA AGGTTTAATT TTTTGCTTGA
  841 TAAAATGGAC TTAATTTTTG GGGCACATGG CAATGCTGTT TTAGAGCAAT ATATGGCTGG
  901 GGTGGCCTGG ATTCATTGTT TGCTGCCTCA AATGGACACT GTCATTTATG AGTTCTTAAA
  961 ATGCATTGTA TTAAACATTC CCAAAAAAAA AGGTACTGGC TATTTAAAGG GGCCAATAGA
 1021 CAGTGGGCAA AACTACTTTA GCTGCAGCTT TACTTGATCT CTGTGGGGGG AAGTCATTTA
 1081 ATGTATATGC CAATTAGAAG ATTAACCTTG AGTTAGGAGG TGGGTATAGA TTCAGTTATG
1141 GTGTATTTTG AGAGGAATGT CA
//
Primer: JCsp_f1 RDB17355_A9F3c.seq
>03032_17355_A9F3_2_JCsp_f1_B01_04_ABI24.ab1
    1 CCCTGAACAA TGAAGATGGC CCCAACAAAA AGAAAAGGAG AAAGGAAGGA CCCCGTGCAA
   61 GTTCCAAAAC TTCTTATAAG AGGAGGAGTA GAAGTTCTAG AAGTTAAAAC TGGGGTTGAC
  121 TCAATTACAG AGGTAGAATG CTTTTTAACT CCAGAAATGG GTGACCCAGA TGAGCATCTT
  181 AGGGGTTTTA GTAAGTCAAT TTCTATATCA GATACATTTG AAAGTGACTC CCCAAATAAG
  241 GACATGCTTC CTTGTTACAG TGTGGCCAGA ATTCCACTAC CCAATCTAAA TGAGGATCTA
  301 ACCTGTGGAA ATATACTAAT GTGGGAGGCT GTGACCTTAA AAACTGAGGT TATAGGGGTG
  361 ACAACTTTGA TGAATGTGCA CTCTAATGGT CAAGCAACTC ATGACAATGG TGCAGGAAAG
  421 CCAGTGCAGG GCACCAGCTT TCATTTTTTT TCTGTTGGGG GGGAGGCTTT AGAATTACAG
  481 GGGGTGGTTT TTAATTACAG AACAAAGTAC CCAGATGGAA CAATTTTTCC AAAGAATGCA
  541 ACAGTGCAAT CTCAAGTAAT GAACACAGAG CACAAGGCGT ACCTAGATAA GAACAAAGCA
  601 TATCCTGTTG AATGTTGGGT TCCTGATCCC ACCAGAAATG AAAACACAAG ATATTTTGGG
  661 ACACTAACAG GAGGAGAAAA TGTTCCTCCA GTTCTTCATA TAACAAATAC TGCCACAACA
  721 GTGCTGCTTG ATGAATTTGG TGTTGGGCCA CTTTGCAAAG GTGACAACTT GTATTTGTCA
  781 GCTGTTGATG TTTGTGGAAT GTTTACTAAC AGATCTGGTT CCCAGCAGTG GAGAGGACTG
  841 TCCAGATATT TTAAGGTTCA GCTCAGAAAA AGGAGGGTTA AAAACCCCTA CCCAATTTCT
  901 TTCCTTCTTA CTGATTTGAT TAACAGAAAG ACCCCTAGAG TTGATGGGCA GCCTATGTAT
  961 GGTATGGATG CTCAGTAGAG AGTTTAGAGT TTTTTGAGGG ACAGAGGAAC TTCCAGGGAC
 1021 CCAGACATGA TGAGATATGG TGGACAGGAT ATGGACAGTT GCAACCAAGA TGCTGGTACC
 1081 CAAAAGGCCT TATTGTATAT GCCAGTAACA TCTTGTGAAA GGTATATAAC TCGCAGGGTA
1141 T
//
Primer: JCsp_R2 RDB17355_A9F3d.seq
>03032_17355_A9F3_2_JCsp_R2_B03_06_ABI24.ab1
    1 CGGCTAGGTA AACCTGGGGT TATACTTTAT TAAAATGTAC TGCATATTAC AATAAAGGCT
   61 TTTGGTTACA GCATCTTTGT TTGCAACTGT CCATATCTGT CAACATATCT CATCATGTCT
  121 GGGTCCCCTG GAAGTTCCTC TGTCCCCTCA AAAACTCTAA CCTCCTCTAC CTGAGCATCC
  181 ATACCATACA TAGGCTGCCC ATCAACTCTA GGGGTCCTTC TGTTAATCAA ATCAGTAAGA
  241 AGGAAAGAAA TTGGGTAGGG GTTTTTAACC CTCCTTTTTC TGAGCTGAAC CTTAAAATAT
  301 CTGGACAGTC CTCTCCACTG CTGGGAACCA GATCTGTTAG TAAACATTCC ACAAACATCA
  361 ACAGCTGACA AATACAAGTT GTCACCTTTG CAAAGTGGCC CAACACCAAA TTCATCAAGC
  421 AGCACTGTTG TGGCAGTATT TGTTATATGA AGAACTGGAG GAACATTTTC TCCTCCTGTT
  481 AGTGTCCCAA AATATCTTGT GTTTTCATTT CTGGTGGGAT CAGGAACCCA ACATTCAACA
  541 GGATATGCTT TGTTCTTATC TAGGTACGCC TTGTGCTCTG TGTTCATTAC TTGAGATTGC
  601 ACTGTTGCAT TCTTTGGAAA AATTGTTCCA TCTGGGTACT TTGTTCTGTA ATTAAAAACC
  661 ACCCCCTGTA ATTCTAAAGC CTCCCCCCCA ACAGAAAAAA AATGAAAGCT GGTGCCCTGC
  721 ACTGGCTTTC CTGCACCATT GTCATGAGTT GCTTGACCAT TAGAGTGCAC ATTCATCAAA
  781 GTTGTCACCC CTATAACCTC AGTTTTTAAG GTCACAGCCT CCCACATTAG TATATTTCCA
  841 CAGGTTAGAT CCTCATTTAG ATTGGGTAGT GGAATTCTGG CCACACTGTA ACAAGGAAGC
  901 ATGTCCTTAT TTGGGGAGTC ACTTTCAAAT GTATCTGATA TAGAAATTGA CTTACTAAAA
  961 CCCCTAAGAT GCTCATCTGG GTCACCCATT TCTGGGAGTT TAAAAAGCAT TCTACCCTCT
 1021 GTAATTTGAG TCAAACCCCA GTTTTAACTT CTAGAACTTT CTACTCTCGT CCTATAAGGA
1081 AGTTTTGGAA CTGCACGGGA TTCTTCGTTC TTCTTTTCGT TTTGTTGGGG GG
//
Primer: JCsp_f4 RDB17355_A9F3e.seq
>03032_17355_A9F3_2_JCsp_f4_F01_16_ABI24.ab1
    1 TACTTCATGG GATTCTCCCT ATTCAGCACT TTGTCCATTT TTGCTTTTTG TAGCAAAAAA
   61 TTAGTGCAAA AAAGGGAAAA ACAAGGGAAT TTCCCTGGCC TCCTAAAAAG CCTCCACGCC
  121 CTTACTACTT CTGAGTAAGC TTGGAGGCGG AGGCGGCCTC GGCCTCCTGT ATATATAAAA
  181 AAAAGGGAAG GTAGGGAGGA GCTGGCTAAA ACTGGATGGC TGCCAGCCAA GCATGAGCTC
  241 ATACCTAGGG AGCCAACCAG CAGACAGCCA GAGGGAGCCC TGGCTGCATG CCACTGGCAG
  301 TTATAGTGAA ACCACTCCCA TAGTCCTTAA TCACAAGTAA ACAAAGCACA AGGGGAAGTG
  361 GAAAGCAGCC AAGGGAACAT GTTTTGCGAG CCAGAGCTGT TTTGGCTTGT CACCAGCTGG
  421 CCATGGTTCT TCGCCAGCTG TCACGTAAGG CTTCTGTGAA AGTTAGTAAA ACCTGGAGTG
  481 GAACTAAAAA AAGAGCTCAA AGGATTTTAA TTTTTTTGTT AGAATTTTTG CTGGATTTTT
  541 GCACAGGTGA AGACAGTGTA GACGGGAAAA AAAGGCAGAA ACACAGTGGT TTGACTCAGC
  601 AGACATACAG TGCTTTGCCT GAACCAAAAG CTACATAGGT AAGTAATGTT TTTTTTTGTG
  661 TTTTCAGGTT CATGGGTGCC GCACTTGCAC TTTTGGGGGA CCTAGTTGCT ACTGTTTCTG
  721 AGGCTGCTGC TGCCACAGGA TTTTCAGTAG CTGAAATTGC TGCTGGAGAG GCTGCTGCTA
  781 CTATAGAAGT TGAAATTGCA TCCCTTGCTA CTGTAGAGGG GATTACAAGT ACCTCTGAGG
  841 CTATAGCTGC AATAGGCCTT ACTCCTGAAA CATATGCTGT AATTACTGGA GCTCCGGGGG
  901 GCTGTAGCTG GGGTTTGCTG CATTTGGTTC AAACTGTAAA CTGGTGGTAG TGCTATTGCT
  961 CAGTTGGGAT ATAGATTTTT TGCTGACTGG GGATCATAAA GTTTCAACAG TTGGGCTTTT
 1021 TCAGCAGCCA AGCTATGGCT TTACAGATTA TTTAAATCCA GAAGGACTAC TATGAATATT
 1081 TTATTTCCTG GGAGTGAATG CCCTTTTGTA CATATTCACT AATTTAGAAT TCCTAGAACA
1141 TTGGGGCCCC TTCCATTTGG ATTCTCTTC
//

Please visit Sequencing and PCR primers for primer information.


References

Original, user report and related articles

original Yogo, Y., Isolation of a possible archetypal JC virus DNA sequence from nonimmunocompromised individuals. J. Virol., 64, 3139-3143 (1990). PMID 2159570.

2019.07.10

GNP_filter3_RDBDEP_html_190431.pl