Please review the QC test results indicated by icon below as well as clone information before placing your order.

pCY

Complete genome of JC virus, archetype

Remarks, protocol and/or map (gif)	RDB03031.gif

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QC test results

RIKEN BRC has sequenced portions of this material for quality test.
Please review the QC test results indicated by icon as well as clone information before placing your order.

Test sheet	RDB17446_A9F3p1-1.pdf

Nucleotide sequence of a portion of this resource (if available).

Primer: pUC-CAPbs_up_F () Sequence file: RDB17446_A9F3a.seq
>03031_12319_A9F3_pUC-CAPbs_up_F_A04_01_ABI24.ab1     1 CTCAGTGCAG CGGGCAGTGA GCGCACGCAA TTAATGTGAG TTAGCTCACT CATTAGGCAC    61 CCCAGGCTTT ACACTTTATG CTTCCGGCTC GTATGTTGTG TGGAATTGTG AGCGGATAAC   121 AATTTCACAC AGGAAACAGC TATGACCATG ATTACGCCAA GCTTGCATGC CTGCAGGTCG   181 ACTCTAGAGG ATCCCAACAC TCTACCCCAC CTAAGAAGAA AAAAAAGGTA GAAGACCCTA   241 AAGACTTTCC TGTAGATCTG CATGCATTCC TCAGTCAAGC TGTGTTTAGT AATAGAACTG   301 TTGCTTCTTT TGCTGTGTAT ACCACTAAAG AAAAAGCTCA AATTTTATAT AAGAAACTTA   361 TGGAAAAATA TTCTGTAACC TTTATAAGTA GACATGGTTT TGGGGGTCAT AATATTTTGT   421 TTTTTTTAAC ACCACATAGA CATAGAGTTT CAGCAATTAA TAATTACTGT CAGAAACTAT   481 GTACCTTTAG TTTTTTAATT TGTAAAGGTG TGAATAAGGA ATACTTGTTT TACAGTGCCT   541 TGTGTAGACA GCCATATGCA GTAGTGGAAG AAAGTATTCA GGGGGGCCTT AAGGAGCATG   601 ACTTTAACCC AGAAGAACCA GAAGAAACTA AGCAGGTTTC ATGGAAATTA GTTACACAGT   661 ATGCTTTGGA CACCAAGTGT GAGGATGTTT TCTTGCTTAT GGGCATGTAC TTAAACTTTC   721 AGGAAAACCC ACTGCAATGC AAAAAATGTG AAAAGAAGGA TCAGCCAAAT CACTTTAACC   781 ATCATGAAAA GCACTATTAT AATGCCCAAA TTTTTGCAGA TAGCAAAAAT CAAAAAAGCA   841 TTTGCCAGCA GGCTGTTGAT ACTGTAGCAG CCAAACAAAG GGTTGACAGT CTCCATATGA   901 CCAGAGAAGA AATGTTAGTT GAAAGGTTTA ATTTTTTGCT TGATAAAATG GGACTTAATT   961 TTTGGGGCAC ATGGCAATGC TGTTTTAGAG CATATATGGG CTGGGTGGGC CTGGATTCAT  1021 TGTTGCTGCC TCAAATGACA CAGTCATTTA TGAGTTCTAA AATGCATTGT ATAAAACATC  1081 AAAAAAAAGT ACTGGCTATC CAAGGCCATA GAACAGTTGC CAAAAACTAC TTTAACGCTG 1141 GCAAGGCTGT TACC //
Primer: pUC-M13_-100 () Sequence file: RDB17446_A9F3b.seq
>03031_12319_A9F3_pUC-M13_-100_B04_04_ABI24.ab1     1 CGGCAGGGCG GAATTAAGTT GGGTACGCCA GGGTTTTCCC AGTCACGACG TTGTAAAACG    61 ACGGCCAGTG AATTCGAGCT CGGTACCCGG GGATCCTGTG TTTTCATCAT CACTGGCAAA   121 CATTTCTTCA TGGCAAAACA GGTCTTCATC CCACTTCTCA TTAAATGTAT TCCACCAGGA   181 TTCCCACTCA TCTGTTCCAT AGGTTGGCAC CTAAAAACAA AAAATTCAGT TTATGTAAAA   241 AACAAAATGC CCTGCAAAAG AAAAATTGTG GTTTACCTTA AAGCTTTAGA TCCCTGTAGG   301 GGGTGTCTCC AAGAACCTTC TCCCAGCAAT GAAGAGCTTC TTGGGTTAAG TCACACCCAA   361 ACCATTGTCT GAAGCAATCA AAGCAATAGC AATCTATCCA CACAAGTGGG CTGCTTCTTA   421 AAAATTTTCT GTTTCTATGC CTTAATTTTA GCATGCACAT TAAACAGGGG CAATGCACTG   481 AAGGATTAGT GGCACAATTA GGCCATTCCT TGCAATAAAG AGTATCAGAA TTAGGAGGAA   541 AATCACAACC AACCTCTGAA CTATTCCATG TACCAAAATC AGGCTGATGA GCAACTTTTA   601 CACCTTGTTC CATTTTTTTA TATAAAAAGT TCATTCTCTT CATTTTGTCT TCGTCCCCAC   661 CTTTATCAGG GTGAAGTTCT TTGCATTTTT TCAGATAAGC TTTTCTCATG ACAGGAATGT   721 TTCCCCATGC AGATCTATCA AGGCCTAATA AATCCATGAG CTCCATGGAT TCCTCCCTAT   781 TCAGCACTTT GTCCATTTTT GCTTTTTGTA GCAAAAAATT AGTGCAAAAA AGGGAAAAAC   841 AAGGGAATTT CCCTGGCCTC CTAAAAAGCC TCCACGCCCT TACTACTTCT GAGTAAGCTT   901 GGAGGCGGAG GCGGCCTCGG CCTCCTGTAT ATATAAAAAA AAAGGGAAGG TAGGGGAGGA   961 GCTGGCTAAA ACTGGGATGG GCTGCCAGCC AAGCATGAGC TCATACCCTA GGGAGCCAAC  1021 CCAGCTGACA GCCCAGAGGG AGCCCTGCTG CAATGCCACT GTAGTTATAG TGGAAACCCT  1081 CCATAGTTCT TTATTCACAG TAACAAGCAC AGGGAAGTTG AAAGCAGCCC AGGGGACAAT 1141 GT //
Primer: JCsp_f1 () Sequence file: RDB17446_A9F3c.seq
>03031_12319_A9F3_JCsp_f1_A01_01_ABI24.ab1     1 TTCCTTGAGC ATATGAAGAT GGCCCCAACA AAAAGAAAAG GAGAAAGGAA GGACCCCGTG    61 CAAGTTCCAA AACTTCTTAT AAGAGGAGGA GTAGAAGTTC TAGAAGTTAA AACTGGGGTT   121 GACTCAATTA CAGAGGTAGA ATGTTTTTTA ACTCCAGAAA TGGGTGACCC AGATGAGCAT   181 CTTAGGGGTT TTAGTAAGTC AATTTCTATA TCAGATACAT TTGAAAGTGA CTCCCCAAAT   241 AAGGACATGC TTCCTTGTTA CAGTGTGGCC AGAATTCCAC TACCCAATCT AAATGAGGAT   301 CTAACCTGTG GAAATATACT AATGTGGGAG GCTGTGACCT TAAAAACTGA GGTTATAGGG   361 GTAACAACTT TGATGAATGT GCACTCTAAT GGTCAAGCAA CTCATGACAA TGGTGCAGGA   421 AAGCCAGTGC AGGGCACCAG CTTTCATTTT TTTTCTGTTG GGGGGGAGGC TTTAGAATTA   481 CAGGGGGTGG TTTTTAACTA CAGAACAAAG TACCCAGATG GAACAATTTT TCCAAAGAAT   541 GCAACAGTGC AATCTCAAGT AATGAACACA GAGCACAAGG CGTACCTAGA TAAGAACAAA   601 GCATATCCTG TTGAATGTTG GGTTCCTGAT CCCACCAGAA ATGAAAACAC AAGATATTTT   661 GGGACACTAA CAGGAGGAGA AAATGTTCCT CCAGTTCTTC ATATAACAAA CACTGCCACA   721 AACAGTGCTG CTTGATGAAT TTGGTGTTGG GCCCACTTTG CAAAGGTGAC AACTTGTATT   781 TGTCAGCTGT GGATGTTTGT GGCATGTTTA CTAACAGATC TGGTTCCCAG CAGTGGAGAG   841 GACTGTCCAG ATATTTTAAA GGTTCAGCTA AGAAAAAGGA GGGTTAAAAA CCCCCTAACC   901 CAATTTCTTT CCTTTCTTAC TGATTTAATT AACAGAAGGA ACCCCTAAAT TTGATGGGGC   961 AGCCTATGTA TGGGCATGGA ATGCCTCAGG TAGAGGGAGG GTTAGAGTTT TTTGTAGGGG 1021 GAAA //
Primer: JCsp_R2 () Sequence file: RDB17446_A9F3d.seq
>03031_12319_A9F3_JCsp_R2_A03_03_ABI24.ab1     1 CGGCAAGTAA AGCTGGTTAT ACTTTATTAA AATGTACTGC ATATTACAAT AAAGGCTTTT    61 GATTACAGCA TCTTTGTCTG CAACTGTCCA TATCTGTCAA CATATCTCAT CATGTCTGGG   121 TCCCCTGGAA GTTCCTCTGT CCCCTCAAAA ACTCTAACCT CCTCTACCTG AGCATCCATG   181 CCATACATAG GCTGCCCATC AACTCTAGGG GTCCTTCTGT TAATTAAATC AGTAAGAAGG   241 AAAGAAATTG GGTAGGGGTT TTTAACCCTC CTTTTTCTTA GCTGAACCTT AAAATATCTG   301 GACAGTCCTC TCCACTGCTG GGAACCAGAT CTGTTAGTAA ACATGCCACA AACATCCACA   361 GCTGACAAAT ACAAGTTGTC ACCTTTGCAA AGTGGCCCAA CACCAAATTC ATCAAGCAGC   421 ACTGTTGTGG CAGTGTTTGT TATATGAAGA ACTGGAGGAA CATTTTCTCC TCCTGTTAGT   481 GTCCCAAAAT ATCTTGTGTT TTCATTTCTG GTGGGATCAG GAACCCAACA TTCAACAGGA   541 TATGCTTTGT TCTTATCTAG GTACGCCTTG TGCTCTGTGT TCATTACTTG AGATTGCACT   601 GTTGCATTCT TTGGAAAAAT TGTTCCATCT GGGTACTTTG TTCTGTAGTT AAAAACCACC   661 CCCTGTAATT CTAAAGCCTC CCCCCCAACA GAAAAAAAAT GAAAGCTGGT GCCCTGCACT   721 GGCTTTCCTG CACCATTGTC ATGAGTTGCT TGACCATTAG AGTGCACATT CATCAAAGTT   781 GTTACCCCTA TAACCTCAGT TTTTAAGGTC ACAGCCTCCC ACATTAGTAT ATTTCCACAG   841 GTTAGATCCT CATTTAGATT GGGTAGTGGA ATTCTGGCCA CACTGTAACA AGGAAGCATG   901 TCCTTATTTG GGGAGTCACT TTCAAATGTA TCTGATATAG AAATTGACTT ACTAAAACCC   961 CTAAGATGCT CATCTGGGTC ACCCATTTTC TGGAGTTAAA AAACATTTCT ACCTCTGTAT  1021 TGAGTCACCC CAGTTTTTAC TCTAGACTCT ACTCCTTCTC TATAGAGTTT TGGAACTTGC 1081 ACTGGTCATC CATTCTCGAT ACCGATCTGG AATGGGGGAT CATA //
Primer: JCsp_f4 () Sequence file: RDB17446_A9F3e.seq
>03031_12319_A9F3_JCsp_f4_E01_13_ABI24.ab1     1 ACATCATGGG ATTCTCCCTA TTCAGCACTT TGTCCATTTT TGCTTTTTGT AGCAAAAAAT    61 TAGTGCAAAA AAGGGAAAAA CAAGGGAATT TCCCTGGCCT CCTAAAAAGC CTCCACGCCC   121 TTACTACTTC TGAGTAAGCT TGGAGGCGGA GGCGGCCTCG GCCTCCTGTA TATATAAAAA   181 AAAGGGAAGG TAGGGAGGAG CTGGCTAAAA CTGGATGGCT GCCAGCCAAG CATGAGCTCA   241 TACCTAGGGA GCCAACCAGC TGACAGCCAG AGGGAGCCCT GGCTGCATGC CACTGGCAGT   301 TATAGTGAAA CCCCTCCCAT AGTCCTTAAT CACAAGTAAA CAAAGCACAA GGGGAAGTGG   361 AAAGCAGCCA GGGGAACATG TTTTGCGAGC CAGAGCTGTT TTGGCTTGTC ACCAGCTGGC   421 CATGGTTCTT CGCCAGCTGT CACGTAAGGC TTCTGTGAAA GTTAGTAAAA CCTGGAGTGG   481 AACTAAAAAA AGAGCTCAAA GGATTTTAAT TTTTTTGTTA GAATTTTTGC TGGACTTTTG   541 CACAGGTGAA GACAGTGTAG ACGGGAAAAA AAGACAGAAA CACAGTGGTT TGACTGAGCA   601 GAGATACAGT GCTTTGCCTG AACCAAAAGC TACATAGGTA AGTAATGTTT TTTTTTGTGT   661 TTTCAGGTTC ATGGGTGCCG CACTTGCACT TTTGGGGGAC CTAGTTGCTA CTGTTTCTGA   721 GGCTGCTGCT GCCACAGGAT TTTCAGTAGC TGAAATTGCT GCTGGAGAGG CTGCTGCTAC   781 TATAGAAGTT GAAATTGCAT CCCTTGCTAC TGTAGAGGGG ATTACAAGTA CCTCTGAGGC   841 TATAGCTGCT ATAGGCCTTA CTCCTGAAAC ATATGCTGTA ATTACTGGAG CTCCGGGGGG   901 CTGTAGCTGG GTTTGCTGCA TTGGTTCAAA CTGTAACTGG TGGTAGTGCT ATTGCTCAGT   961 TGGGATATAG ATTTTTTTGC TGACTGGGAT CATAAAGTTT CAACAGTTTG GGCTTTTTTC  1021 AGCAGCAGCT ATGGCTTTAC AGTTATTTAA TCCCAGAGAC TACTATGATA TTTAATTTCT  1081 TGGAGTGAAT GCTTTGATAC ATATTCACTA TTAGATTCTT AGAACATGGG GGGCCATTCG 1141 TTTGAATCTT CGA //

Please visit Sequencing and PCR primers for primer information.

References

Original, user report and related articles

2023.05.01

GNP_filter3_RDBDEP_html_230501.pl