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RIKEN DNA Bank Mouse Resource - Atg16l1

Gene ID NCBI Gene 77040 |  KEGG mmu:77040
Gene Symbol Atg16l1
Protein Name autophagy related 16-like 1 (S. cerevisiae)
Synonyms 1500009K01Rik|Apg16l|Atg16l|WDR30
Featured content Autophagy (mouse)
Ortholog resource in our bank

  Atg16l1


External dsatabase

  KEGG gene

  KEGG Ortholog

  NCBI Gene


Individualy Deposited Resource

Catalog number Name of Resource Description
RDB15376 pEF-T7-mouse Atg16L1g Expression vector of mouse Atg16L1, N-terminal T7-tag.

webcatalog20220516.tab


NIA/NIH Mouse cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number Clone name Vector Sequence Status
5' terminal EST, submitted in DDBJ(1) 3' terminal EST, submitted in DDBJ(1)
MCH103258 H4058C10 pSPORT1 BQ559450 BQ559449  
MCH038436 H3096B12 pSPORT1  

♦ Full length sequence is not available. The clone could differ from the NCBI mRNA reference sequence.
(1) Actual EST sequence either 5' or 3' terminal end. Data were submitted to the DNA Data Bank of Japan (DDBJ).
♦ NIA/NIH Mouse cDNA clone was deposited by Dr Minoru Ko (Tanaka et al., PNAS 97, 9127-9132, 2000. VanBuren V, et al. Genome Research 12, 1999-2003, 2002) at the National Institute on Aging, the National Institutes of Health, U.S.A.

NIAmouse22k_2022Apr03.csv


Mouse BAC clone

Clone request [in Japanese] [in English]

BAC clone search [map around Gene ID 77040] (link to our BAC browser)

♦ Every single our BAC clones have analyzed their terminal end sequences to map on the genome. Most of them are assigned by both ends and indicated with blue line on the genome browser (they likely contain the region). Others are assigned only by a single end and indicated with red line on the genome browser (containing piece is unsure).
♦ Reasons that we did not use the other end result for mapping are: (1) Data was not suitable for BLAST analysis (short read, repeats, no data or such stuff); (2) Result of BLAST analysis is unlikely [two ends are, too far away (>0.3 Mb), distinct chromosome, same orientation, or such incomprehensible].
♦ Full length sequence is not available.


2022.05.18

Mus_musculus_gene_info200108.csv - RDB_mmu_GIxxxxxxxxx_html_220215.pl