RIKEN DNA Bank Mouse Resource

RIKEN DNA Bank Mouse Resource - Atg5

Gene ID	NCBI Gene 11793 \| KEGG mmu:11793
Gene Symbol	Atg5
Protein Name	autophagy related 5
Synonyms	2010107M05Rik\|3110067M24Rik\|Apg5l\|Atg5l\|Paddy
Featured content	Autophagy (mouse)
Featured content	Mitophagy - mouse

Ortholog resource in our bank

Atg5

External dsatabase

  KEGG gene

  KEGG Ortholog

  NCBI Gene

Individualy Deposited Resource

Catalog number	Name of Resource	Description
RDB15374	pEF-T7-mouse Atg5	Expression vector of mouse Atg5, N-terminal T7-tag.
RDB19634	pMXs-IP-EGFP-mAtg5	Retroviral vector for stable expression of mouse Atg5 with C-terminal EGFP.
RDB19784	pEGFP-C1-mApg5	Transient expression vector of mouse Apg5 with N-terminal EGFP.
RDB19789	pEGFP-C1-mApg5(K130R)	Transient expression vector of mouse Apg5 mutant (K130R) with N-terminal GFP.

webcatalog20220516.tab

NIA/NIH Mouse cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number	Clone name	Vector	Sequence		Status
Catalog number	Clone name	Vector	5' terminal EST, submitted in DDBJ⁽¹⁾	3' terminal EST, submitted in DDBJ⁽¹⁾	Status
MCH020852	H3052C04	pSPORT1	BG080320	BG067250
MCH022481	H3056D09	pSPORT1	BG080763	BG067624

♦ Full length sequence is not available. The clone could differ from the NCBI mRNA reference sequence.
(1) Actual EST sequence either 5' or 3' terminal end. Data were submitted to the DNA Data Bank of Japan (DDBJ).
♦ NIA/NIH Mouse cDNA clone was deposited by Dr Minoru Ko (Tanaka et al., PNAS 97, 9127-9132, 2000. VanBuren V, et al. Genome Research 12, 1999-2003, 2002) at the National Institute on Aging, the National Institutes of Health, U.S.A.

NIAmouse22k_2023May31.csv

Mouse BAC clone

Clone request [in Japanese] [in English]

BAC clone search	[map around Gene ID 11793] (link to our BAC browser)

♦ Every single our BAC clones have analyzed their terminal end sequences to map on the genome. Most of them are assigned by both ends and indicated with blue line on the genome browser (they likely contain the region). Others are assigned only by a single end and indicated with red line on the genome browser (containing piece is unsure).
♦ Reasons that we did not use the other end result for mapping are: (1) Data was not suitable for BLAST analysis (short read, repeats, no data or such stuff); (2) Result of BLAST analysis is unlikely [two ends are, too far away (>0.3 Mb), distinct chromosome, same orientation, or such incomprehensible].
♦ Full length sequence is not available.

2023.08.29

Mus_musculus_gene_info230514.csv - RDB_mmu_GIxxxxxxxxx_html_220215.pl